DeePhage：预测噬菌体的生活方式

GitHub - shufangwu/DeePhage: A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

安装

conda create -n deephage
conda activate deephage
pip install numpy
pip install h5py
pip install tensorflow
pip install keras
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wget https://ssd.mathworks.com/supportfiles/downloads/R2018a/deployment_files/R2018a/installers/glnxa64/MCR_R2018a_glnxa64_installer.zip
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unzip MCR_R2018a_glnxa64_installer.zip
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./install -mode silent -agreeToLicense yes -destinationFolder  /home/zhongpei/hard_disk_sda2/zhongpei/Software/MCR/MCR/
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echo 'export LD_LIBRARY_PATH="${LD_LIBRARY_PATH:+${LD_LIBRARY_PATH}:}/home/zhongpei/hard_disk_sda2/zhongpei/Software/MCR/runtime/glnxa64:/home/zhongpei/hard_disk_sda2/zhongpei/Software/MCR/bin/glnxa64:/home/zhongpei/hard_disk_sda2/zhongpei/Software/MCR/sys/os/glnxa64:/home/zhongpei/hard_disk_sda2/zhongpei/Software/MCR/extern/bin/glnxa64"' >> ~/.bashrc
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echo $LD_LIBRARY_PATH
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git clone https://github.com/shufangwu/DeePhage.git
cd DeePhage
#使用
DeePhage <input_file_folder>/input_file.fna <output_file_folder>/output_file.csv